using-the-cluster
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using-the-cluster [2019/05/31 11:00] – added info about compute05 jean-baka | using-the-cluster [2019/05/31 11:40] – [Using the Cluster] jean-baka | ||
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* compute03: fast CPUs, but few of them | * compute03: fast CPUs, but few of them | ||
* compute04: batch jobs, has lots of disk space in ''/ | * compute04: batch jobs, has lots of disk space in ''/ | ||
+ | * compute05: batch jobs, has the fastest processors (AMD EPYC) | ||
To get access to the cluster you should talk to Jean-Baka (he sits in BecA). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. | To get access to the cluster you should talk to Jean-Baka (he sits in BecA). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. | ||
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^Machine | ^Machine | ||
|taurus|116 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{https:// | |taurus|116 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{https:// | ||
- | |mammoth | 516 GB RAM \\ 16 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{https:// | + | |mammoth | 516 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{https:// |
|compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{https:// | |compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{https:// | ||
|compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{https:// | |compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{https:// |
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth