Differences

This shows you the differences between two versions of the page.

--- using-the-cluster [2018/07/05 06:24] – aorth
+++ using-the-cluster [2019/03/25 09:47] – aorth
@@ Line 5: / Line 5: @@
   * mammoth: used for high-memory jobs like genome assembly (mira, newbler, abyss, etc)
   * compute03: fast CPUs, but few of them
+  * compute04: batch jobs, has lots of disk space in ''/var/scratch''
 To get access to the cluster you should talk to [[d.githae@cgiar.org|Dedan Githae]] (he sits in BecA). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster.
@@ Line 10: / Line 11: @@
 ===== Cluster Organization =====
 The cluster is arranged in a master/slave configuration; users log into HPC (the master) and use it as a "jumping off point" to the rest of the cluster. Here's a diagram of the topology:
-{{:ilri-hpc-topology.png?350|}}
+{{:infrastructure-2018-fs8.png|}}
 ==== Detailed Information ====
@@ Line 18: / Line 20: @@
 |compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute2&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} |
 |compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute03&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} |
+|compute04 | 48 GB RAM \\ 8 CPUs \\ 10TB scratch | batch jobs \\ Good for BLAST, structure, R, etc that need lots of disk space |{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute04&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} |
 ===== Backups =====
 At the moment we don't backup users' data in their respective home folders. We therefore advise users to have their own backups.