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using-the-cluster [2018/02/07 06:32] – [Using the Cluster] aorthusing-the-cluster [2019/03/25 09:43] – aorth
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 ===== Cluster Organization ===== ===== Cluster Organization =====
 The cluster is arranged in a master/slave configuration; users log into HPC (the master) and use it as a "jumping off point" to the rest of the cluster. Here's a diagram of the topology: The cluster is arranged in a master/slave configuration; users log into HPC (the master) and use it as a "jumping off point" to the rest of the cluster. Here's a diagram of the topology:
-{{:ilri-hpc-topology.png?350|}}+{{:infrastructure-2018-fs8.png|}} 
 ==== Detailed Information ==== ==== Detailed Information ====
  
 ^Machine           ^Specifications                ^Uses                 ^1 hour status   ^ ^Machine           ^Specifications                ^Uses                 ^1 hour status   ^
-|taurus|116 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{http://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=taurus&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} | +|taurus|116 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=taurus&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} | 
-|mammoth | 516 GB RAM \\ 16 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{http://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=mammoth&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} | +|mammoth | 516 GB RAM \\ 16 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=mammoth&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} | 
-|compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{http://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute2&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} | +|compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute2&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} | 
-|compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{http://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute03&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} |+|compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute03&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} | 
 +|compute04 | 48 GB RAM \\ 8 CPUs | batch jobs \\ Good for BLAST, structure, R, etc that need lots of disk space |{{https://hpc.ilri.cgiar.org/ganglia/graph.php?g=load_report&z=medium&c=compute&h=compute04&m=os_name&r=hour&s=descending&hc=4&mc=2&.gif?}} |
  
 ===== Backups ===== ===== Backups =====
 At the moment we don't backup users' data in their respective home folders. We therefore advise users to have their own backups. At the moment we don't backup users' data in their respective home folders. We therefore advise users to have their own backups.
  
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth