using-the-cluster
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using-the-cluster [2016/12/22 12:35] – [Detailed Information] joguya | using-the-cluster [2020/03/19 12:13] – [Using the Cluster] jean-baka | ||
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====== Using the Cluster ====== | ====== Using the Cluster ====== | ||
- | ILRI's high-performance computing " | + | ILRI's high-performance computing " |
* hpc: main login node, " | * hpc: main login node, " | ||
- | * taurus, | + | * taurus, compute2, compute04: used for batch and interactive jobs like BLAST, structure, R, etc (compute04 has lots of disk space under its ''/ |
* mammoth: used for high-memory jobs like genome assembly (mira, newbler, abyss, etc) | * mammoth: used for high-memory jobs like genome assembly (mira, newbler, abyss, etc) | ||
+ | * compute03: fast CPUs, but few of them | ||
+ | * compute05: batch jobs, has the fastest processors (AMD EPYC) | ||
- | To get access to the cluster you should talk to [[J.Oguya@cgiar.org|James Oguya]] | + | To get access to the cluster you should talk to Jean-Baka |
===== Cluster Organization ===== | ===== Cluster Organization ===== | ||
The cluster is arranged in a master/ | The cluster is arranged in a master/ | ||
- | {{:ilri-hpc-topology.png?350|}} | + | {{:hpc_topology_2019_web.png|}} |
==== Detailed Information ==== | ==== Detailed Information ==== | ||
^Machine | ^Machine | ||
- | |taurus|116 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{http:// | + | |taurus|116 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{https:// |
- | |mammoth | 516 GB RAM \\ 16 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{http:// | + | |mammoth | 516 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{https:// |
- | |compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{http:// | + | |compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{https:// |
- | |compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{http:// | + | |compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{https:// |
+ | |compute04 | 48 GB RAM \\ 8 CPUs \\ 10TB scratch | batch jobs \\ Good for BLAST, structure, R, etc that need lots of disk space |{{https:// | ||
+ | |compute05 | 384 GB RAM \\ 48 CPUs \\ 1.6TB scratch | batch jobs \\ Most recent AMD EPYC CPUs, good for BLAST, structure, R, etc |{{https:// | ||
===== Backups ===== | ===== Backups ===== | ||
At the moment we don't backup users' data in their respective home folders. We therefore advise users to have their own backups. | At the moment we don't backup users' data in their respective home folders. We therefore advise users to have their own backups. | ||
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth