using-the-cluster
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using-the-cluster [2016/01/07 13:33] – [Cluster Organization] joguya | using-the-cluster [2016/01/07 13:40] – [Detailed Information] joguya | ||
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====== Using the Cluster ====== | ====== Using the Cluster ====== | ||
- | ILRI's high-performance computing " | + | ILRI's high-performance computing " |
- | * hpc - main login node, " | + | * hpc: main login node, " |
- | * taurus, | + | * taurus, |
- | * mammoth | + | * mammoth: used for high-memory jobs like genome assembly (mira, newbler, abyss, etc) |
To get access to the cluster you should talk to [[a.orth@cgiar.org|Alan Orth]] (he sits in Lab 2). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. | To get access to the cluster you should talk to [[a.orth@cgiar.org|Alan Orth]] (he sits in Lab 2). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. | ||
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^Machine | ^Machine | ||
- | |taurus|- 116 GB RAM \\ - 64 CPUs |- batch and interactive jobs \\ - Good for BLAST, structure, R, admixture, etc.|{{http:// | + | |taurus|116 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{http:// |
- | |mammoth|- 516 GB RAM \\ - 16 CPUs |- batch and high-memory jobs \\ - Good for genome assembly (mira, newbler, abyss, etc)|{{http:// | + | |mammoth | 516 GB RAM \\ 16 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{http:// |
- | |compute2|- 132 GB RAM \\ - 64 CPUs |- batch and interactive jobs \\ - Good for BLAST, structure, R, etc.|{{http:// | + | |compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{http:// |
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth