using-the-cluster
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using-the-cluster [2016/01/07 12:51] – [Detailed Information] joguya | using-the-cluster [2018/02/07 06:32] – [Using the Cluster] aorth | ||
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====== Using the Cluster ====== | ====== Using the Cluster ====== | ||
- | ILRI's high-performance computing " | + | ILRI's high-performance computing " |
- | * hpc - main login node, " | + | * hpc: main login node, " |
- | * taurus, | + | * taurus, compute2, compute04: used for batch and interactive jobs like BLAST, structure, R, etc |
- | * mammoth | + | * mammoth: used for high-memory jobs like genome assembly (mira, newbler, abyss, etc) |
+ | * compute03: fast CPUs, but few of them | ||
- | To get access to the cluster you should talk to [[a.orth@cgiar.org|Alan Orth]] (he sits in Lab 2). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. | + | To get access to the cluster you should talk to [[d.githae@cgiar.org|Dedan Githae]] (he sits in BecA). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. |
===== Cluster Organization ===== | ===== Cluster Organization ===== | ||
The cluster is arranged in a master/ | The cluster is arranged in a master/ | ||
- | {{ :hpc_topology.png?300 |}} | + | {{:ilri-hpc-topology.png?350|}} |
==== Detailed Information ==== | ==== Detailed Information ==== | ||
^Machine | ^Machine | ||
- | |taurus|- 116 GB RAM \\ - 64 CPUs |- batch and interactive jobs \\ - Good for BLAST, structure, R, admixture, etc.|{{http:// | + | |taurus|116 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{http:// |
- | |mammoth|- 516 GB RAM \\ - 16 CPUs |- batch and high-memory jobs \\ - Good for genome assembly (mira, newbler, abyss, etc)|{{http:// | + | |mammoth | 516 GB RAM \\ 16 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{http:// |
- | |compute2|- 132 GB RAM \\ - 64 CPUs |- batch and interactive jobs \\ - Good for BLAST, structure, R, etc.|{{http:// | + | |compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{http:// |
+ | |compute03 | 442 GB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc), mothur|{{http:// | ||
+ | |||
+ | ===== Backups ===== | ||
+ | At the moment we don't backup users' data in their respective home folders. We therefore advise users to have their own backups. |
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth