using-the-cluster
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using-the-cluster [2015/03/18 15:44] – aorth | using-the-cluster [2021/06/13 15:05] – aorth | ||
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- | ====== Using the cluster | + | ====== Using the Cluster |
- | ILRI's high-performance computing " | + | ILRI's high-performance computing " |
- | * hpc - main login node, " | + | |
- | * taurus,compute2 - good for batch and interactive jobs like BLAST, structure, R, etc | + | * **compupte2**, **compute05**, |
- | * mammoth - good for high-memory jobs like genome assembly (mira, newbler, abyss, etc) | + | * **compute07**: |
+ | * **compute03**: | ||
- | To get access to the cluster you should talk to [[a.orth@cgiar.org|Alan Orth]] | + | To get access to the cluster you should talk to Jean-Baka |
- | ===== Cluster organization ===== | ||
- | The cluster is arranged in a master/ | ||
- | {{ : | ||
- | ==== Detailed | + | ===== How to Connect to the Cluster ===== |
+ | |||
+ | Connecting to the HPC **is not done through clicking on the "Log In" link** on the top right corner of these wiki pages. In order to launch computations on the HPC or even just to view files residing in its storage infrastructure, | ||
+ | |||
+ | ==== If you are running MacOSX (on Apple computers) or any GNU/Linux distribution ==== | ||
+ | |||
+ | Those operating systems are part of the large family of UNIX systems, that almost invariably contain an already-installed SSH client, most often some flavor of the [[https:// | ||
+ | |||
+ | If the above doesn' | ||
+ | |||
+ | |||
+ | ==== If you are running Microsoft Windows ==== | ||
+ | |||
+ | If you are running Windows 10, you can access a simple ssh client by [[https:// | ||
+ | |||
+ | |||
+ | Another option is to [[https:// | ||
+ | * host: '' | ||
+ | * port: leave the default SSH port, i.e. port 22 | ||
+ | * username: your username, as communicated by the person who created your HPC account. | ||
+ | |||
+ | ===== Cluster Organization ===== | ||
+ | The cluster is arranged in a master/ | ||
+ | {{: | ||
+ | |||
+ | ==== Detailed | ||
^Machine | ^Machine | ||
- | |taurus|- 112 GB RAM \\ - 64 CPUs |- batch and interactive jobs \\ - Good for BLAST, structure, R, etc.|{{http:// | + | |compute2| 132 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, etc.|{{https:// |
- | |mammoth|- 512 GB RAM \\ - 16 CPUs |- batch and high-memory jobs \\ - Good for genome assembly (mira, newbler, abyss, etc)|{{http:// | + | |compute03 |
- | |compute2|- 128 GB RAM \\ - 16 CPUs |- batch and interactive jobs \\ - Good for BLAST, structure, R, etc.|{{http:// | + | |compute05 |
+ | |compute06|256 GB RAM \\ 64 CPUs | batch and interactive jobs \\ Good for BLAST, structure, R, admixture, etc.|{{https:// | ||
+ | |compute07| 1 TB RAM \\ 8 CPUs | batch and high-memory jobs \\ Good for genome assembly (mira, newbler, abyss, etc)|{{https:// | ||
+ | |||
+ | ===== Backups ===== | ||
+ | At the moment we don't backup users' data in their respective home folders. We therefore advise users to have their own backups. |
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth