using-the-cluster
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using-the-cluster [2013/07/09 08:57] – [Using the cluster] aorth | using-the-cluster [2016/01/07 13:36] – [Using the Cluster] joguya | ||
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- | ====== Using the cluster | + | ====== Using the Cluster |
- | ILRI's high-performance computing " | + | ILRI's high-performance computing " |
- | * hpc - main login node, " | + | * hpc: main login node, " |
- | * taurus | + | * taurus,compute2: used for batch and interactive jobs like BLAST, structure, R, etc |
- | * mammoth | + | * mammoth: used for high-memory jobs like genome assembly (mira, newbler, abyss, etc) |
To get access to the cluster you should talk to [[a.orth@cgiar.org|Alan Orth]] (he sits in Lab 2). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. | To get access to the cluster you should talk to [[a.orth@cgiar.org|Alan Orth]] (he sits in Lab 2). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. | ||
- | ===== Cluster | + | ===== Cluster |
The cluster is arranged in a master/ | The cluster is arranged in a master/ | ||
- | {{ :hpc_topology.png?300 |}} | + | {{:ilri-hpc-topology.png?350|}} |
- | + | ==== Detailed | |
- | ==== Detailed | + | |
^Machine | ^Machine | ||
- | |taurus|- | + | |taurus|- |
- | |mammoth|- | + | |mammoth|- |
+ | |compute2|- 132 GB RAM \\ - 64 CPUs |- batch and interactive jobs \\ - Good for BLAST, structure, R, etc.|{{http:// |
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth