using-the-cluster
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using-the-cluster [2013/07/09 08:54] – created aorth | using-the-cluster [2016/01/07 13:33] – [Cluster Organization] joguya | ||
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- | ====== Using the cluster | + | ====== Using the Cluster |
ILRI's high-performance computing " | ILRI's high-performance computing " | ||
* hpc - main login node, " | * hpc - main login node, " | ||
- | * taurus - good for batch and interactive jobs like BLAST, structure, R, etc | + | * taurus, |
* mammoth - good for high-memory jobs like genome assembly (mira, newbler, abyss, etc) | * mammoth - good for high-memory jobs like genome assembly (mira, newbler, abyss, etc) | ||
- | To get access to the cluster you should talk to [[a.orth@cgiar.org|Alan Orth]] (he sits in Lab 2). Once you have access you should read up on [[UsingSLURM|SLURM]] so you can learn how to submit jobs to the cluster. | + | To get access to the cluster you should talk to [[a.orth@cgiar.org|Alan Orth]] (he sits in Lab 2). Once you have access you should read up on [[Using SLURM|SLURM]] so you can learn how to submit jobs to the cluster. |
- | ===== Cluster | + | ===== Cluster |
The cluster is arranged in a master/ | The cluster is arranged in a master/ | ||
- | {{ :hpc_topology.png?300 |}} | + | {{:ilri-hpc-topology.png?350|}} |
- | + | ==== Detailed | |
- | ==== Detailed | + | |
^Machine | ^Machine | ||
- | |taurus|- | + | |taurus|- |
- | |mammoth|- | + | |mammoth|- |
+ | |compute2|- 132 GB RAM \\ - 64 CPUs |- batch and interactive jobs \\ - Good for BLAST, structure, R, etc.|{{http:// |
using-the-cluster.txt · Last modified: 2023/01/06 06:14 by aorth