unicycler-software
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Table of Contents
Unicycler
Unicycler is an assembly pipeline for bacterial genomes.
Information
- Version: 0.47.0
- Added: February, 2019
Usage
See versions of unicycler which are available:
$ module avail unicycler
Load one version into your environment and run it:
$ module load unicycler/0.47.0 $ unicycler
Example Batch Job
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/rrwick/Unicycler/archive/v0.4.7.zip $ unzip v0.4.7.zip $ cd Unicycler-0.4.7 $ sudo yum install centos-release-scl $ sudo yum install devtoolset-6-gcc.x86_64 devtoolset-6-gcc-c++.x86_64 python36 python36-setuptools $ scl enable devtoolset-6 bash $ sudo mkdir -p /export/apps/unicycler/0.4.7 $ sudo chown aorth /export/apps/unicycler/0.4.7 $ python36 setup.py install --prefix=/export/apps/unicycler/0.4.7 $ sudo chown -R root:root /export/apps/unicycler/0.4.7
The devtoolset is used because Unicycler requires a GCC compiler newer than 4.9.1.
unicycler-software.1550254023.txt.gz · Last modified: 2019/02/15 18:07 by aorth