This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

• Version: git-73f885f5
• Added: August, 2023
• Link: https://github.com/katholt/srst2

See which versions are available:

$ module avail srst2

Load one version into your environment and run it:

$ module load srst2/git-73f885f5
$ srst2 --version

Notes from the sysadmin during installation:

See also, the bioconda recipe for srst2.