• Version: 3.1.1
• Added: September, 2014
• Link: http://bioinf.spbau.ru/spades

module avail spades

Notes from the sysadmin during installation:

sudo yum install cmake28.x86_64
cd /tmp
wget http://spades.bioinf.spbau.ru/release3.1.1/SPAdes-3.1.1.tar.gz
cd SPAdes-3.1.1
sed -i 's/cmake/cmake28/' spades_compile.sh
scl enable devtoolset-1.1 bash
sudo mkdir -p /export/apps/spades/3.1.1
sudo chown aorth:aorth /export/apps/spades/3.1.1
PREFIX=/export/apps/spades/3.1.1 ./spades_compile.sh
sudo chown -R root:root /export/apps/spades/3.1.1

After loading the module, consult the built-in help:

spades.py --help