SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes.

• Version: r240
• Added: October, 2014
• Link: http://soap.genomics.org.cn/soapdenovo.html

See versions of SOAPdenovo2 which are available:

$ module avail SOAPdenovo2

Notes from the sysadmin during installation:

$ cd /tmp
$ wget 'http://downloads.sourceforge.net/project/soapdenovo2/SOAPdenovo2/src/r240/SOAPdenovo2-src-r240.tgz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fsoapdenovo2%2Ffiles%2FSOAPdenovo2%2Fsrc%2Fr240%2F&ts=1412858518&use_mirror=cznic' -O SOAPdenovo2-src-r240.tgz
$ tar xf SOAPdenovo2-src-r240.tgz
$ cd SOAPdenovo2-src-r240
$ make
$ sudo mkdir -p /export/apps/SOAPdenovo2/r240/bin
$ sudo cp SOAPdenovo-* /export/apps/SOAPdenovo2/r240/bin
$ sudo cp MANUAL LICENSE VERSION /export/apps/SOAPdenovo2/r240