snpeff-software
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snpeff-software [2017/02/11 09:10] – joguya | snpeff-software [2023/06/12 17:48] – aorth | ||
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- | ====== SnpEff | + | ====== SnpEff ====== |
SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes). | SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes). | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: July, 2015 | * Added: July, 2015 | ||
- | * Link: http://snpeff.sourceforge.net/SnpEff.html | + | |
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
- | See versions of snpeff which are available: | + | See which versions of are available: |
< | < | ||
+ | |||
+ | Load one into your environment and run it: | ||
+ | < | ||
+ | snpeff</ | ||
===== Installation ====== | ===== Installation ====== | ||
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< | < | ||
- | $ wget 'http://downloads.sourceforge.net/project/ | + | $ wget https://snpeff.blob.core.windows.net/versions/ |
- | $ unzip snpEff_latest_core.zip | + | $ sudo mkdir -p / |
- | $ sudo mkdir -p / | + | $ sudo cp -r snpEff/* / |
- | $ sudo cp -r snpEff/* / | + | |
- | + | ||
- | Create shell script wrappers for '' | + | |
- | + | ||
- | < | + | |
- | + | ||
- | TOP=$(dirname $0) | + | |
- | + | ||
- | # examples/ | + | |
- | java -Xmx4g -jar $TOP/ | + |
snpeff-software.txt · Last modified: 2023/06/12 17:49 by aorth