snpeff-software
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| snpeff-software [2017/02/11 09:10] – joguya | snpeff-software [2023/06/12 17:38] – aorth | ||
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| - | ====== SnpEff | + | ====== SnpEff ====== |
| SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes). | SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes). | ||
| Line 6: | Line 6: | ||
| ===== Information ===== | ===== Information ===== | ||
| - | * Version: | + | * Version: |
| * Added: July, 2015 | * Added: July, 2015 | ||
| - | * Link: http://snpeff.sourceforge.net/SnpEff.html | + | |
| + | | ||
| ===== Usage ===== | ===== Usage ===== | ||
| - | See versions of snpeff which are available: | + | See which versions of are available: |
| < | < | ||
| + | |||
| + | Load one into your environment and run it: | ||
| + | < | ||
| + | snpeff</ | ||
| ===== Installation ====== | ===== Installation ====== | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | + | < |
| - | $ wget ' | + | |
| - | $ unzip snpEff_latest_core.zip | + | |
| - | $ sudo mkdir -p / | + | |
| - | $ sudo cp -r snpEff/* / | + | |
| - | + | ||
| - | Create shell script wrappers for '' | + | |
| - | + | ||
| - | < | + | |
| - | TOP=$(dirname $0) | ||
| - | # examples/ | ||
| - | java -Xmx4g -jar $TOP/ | ||
snpeff-software.txt · Last modified: 2023/06/12 17:49 by aorth