The Snakemake workflow management system is a tool to create reproducible and scalable data analyses

• Version: 5.7.0
• Added: October, 2019
• Link: https://snakemake.readthedocs.io/en/stable/

See versions of snakemake which are available:

$ module avail snakemake

Load one version into your environment and run it:

$ module load snakemake/5.7.0
$ snakemake

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/snakemake/5.7.0
$ sudo chown aorth /export/apps/snakemake/5.7.0
$ python3.6 -m venv /export/apps/snakemake/5.7.0
$ source /export/apps/snakemake/5.7.0/bin/activate
$ pip install snakemake
$ sudo chown -R root:root /export/apps/snakemake/5.7.0