sistr-software
This is an old revision of the document!
Table of Contents
sistr
Serovar predictions from whole-genome sequence assemblies by determination of antigen gene and cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction.
- Latest Version: 1.0.2
- Added: January, 2018
Usage
Show all available versions of sistr:
$ module avail sistr
Load a particular version of sistr and run it:
$ module load sistr/1.0.2 $ sistr -h
Installation
Notes from the sysadmin during installation:
$ module load python/3.6.2 $ sudo mkdir -p /export/apps/sistr/1.0.2 $ sudo chown aorth /export/apps/sistr/1.0.2 $ python -m venv /export/apps/sistr/1.0.2 $ . /export/apps/sistr/1.0.2/bin/activate $ pip install --upgrade pip $ pip install wheel $ pip install numpy pandas $ pip install sistr_cmd
sistr-software.1516036122.txt.gz · Last modified: 2018/01/15 17:08 by aorth