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shasta-software [2019/09/03 21:25]
aorth created
shasta-software [2020/03/15 11:19] (current)
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: 0.2.0+  * Version: 0.4.0
   * Added: September, 2019   * Added: September, 2019
 +  * Updated: March, 2020
   * Link: https://github.com/chanzuckerberg/shasta   * Link: https://github.com/chanzuckerberg/shasta
  
Line 14: Line 15:
  
 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load shasta/0.2.0+<code>$ module load shasta/0.4.0
 $ shasta</code> $ shasta</code>
 +
 +**Note:** Please use the ''%%--threads%%'' option to limit the number of threads launched by shasta to be the same amount as in your SLURM sbatch allocation. See the [[https://chanzuckerberg.github.io/shasta/CommandLineOptions.html|shasta documentation for more information]]. 
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ sudo mkdir -p /export/apps/shasta/0.2.0/bin +<code>$ cd /tmp 
-$ sudo chown aorth /export/apps/shasta/0.2.0/bin +$ sudo mkdir -p /export/apps/shasta/0.4.0/bin 
-wget https://github.com/chanzuckerberg/shasta/releases/download/0.2.0/shasta-Linux-0.2.0 -O /export/apps/shasta/0.2.0/bin/shasta +$ sudo wget https://github.com/chanzuckerberg/shasta/releases/download/0.4.0/shasta-Linux-0.4.0 -O /export/apps/shasta/0.4.0/bin/shasta 
-$ chmod +x /export/apps/shasta/0.2.0/bin/shasta +sudo chmod +x /export/apps/shasta/0.4.0/bin/shasta</code>
-$ sudo chown root:root /export/apps/shasta/0.2.0/bin/shasta +
-</code>+
shasta-software.1567545956.txt.gz · Last modified: 2019/09/03 21:25 by aorth