Differences

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--- shasta-software [2019/09/03 21:25] – created aorth
+++ shasta-software [2020/03/15 11:19] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 0.2.0
+  * Version: 0.4.0
   * Added: September, 2019
+  * Updated: March, 2020
   * Link: https://github.com/chanzuckerberg/shasta
@@ Line 14: / Line 15: @@
 Load one version into your environment and run it:
-<code>$ module load shasta/0.2.0
+<code>$ module load shasta/0.4.0
 $ shasta</code>
+**Note:** Please use the ''%%--threads%%'' option to limit the number of threads launched by shasta to be the same amount as in your SLURM sbatch allocation. See the [[https://chanzuckerberg.github.io/shasta/CommandLineOptions.html|shasta documentation for more information]].
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ sudo mkdir -p /export/apps/shasta/0.2.0/bin
+<code>$ cd /tmp
-$ sudo chown aorth /export/apps/shasta/0.2.0/bin
+$ sudo mkdir -p /export/apps/shasta/0.4.0/bin
-$ wget https://github.com/chanzuckerberg/shasta/releases/download/0.2.0/shasta-Linux-0.2.0 -O /export/apps/shasta/0.2.0/bin/shasta
+$ sudo wget https://github.com/chanzuckerberg/shasta/releases/download/0.4.0/shasta-Linux-0.4.0 -O /export/apps/shasta/0.4.0/bin/shasta
-$ chmod +x /export/apps/shasta/0.2.0/bin/shasta
+$ sudo chmod +x /export/apps/shasta/0.4.0/bin/shasta</code>
-$ sudo chown root:root /export/apps/shasta/0.2.0/bin/shasta
-</code>