ILRI Research Computing

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====== satsuma2 ======


===== Information =====

  * Version: git-37c5f386
  * Added: September, 2021
  * Link: 

===== Usage =====

See versions of satsuma2 that are available:
<code>$ module avail satsuma2</code>

Load one version into your environment and run it:
<code>$ module load satsuma2/git-37c5f386
$ SatsumaSynteny2</code>

===== Installation ======
Notes from the sysadmin during installation.

<code>$ cd /tmp
$ git clone https://github.com/bioinfologics/satsuma2.git
$ cd satsuma2
$ scl enable devtoolset-7 bash
$ mkdir build && cd build
$ cmake3 .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/export/apps/satsuma2/git-37c5f386
$ make
$ sudo mkdir -p /export/apps/satsuma2/git-37c5f386
$ sudo chown aorth /export/apps/satsuma2/git-37c5f386
$ make install
$ cp ../bin/satsuma_run.sh /export/apps/satsuma2/git-37c5f386/bin
$ sudo chown -R root:root /export/apps/satsuma2/git-37c5f386</code>

Note: you must modify the ''satsuma_run.sh'' script to enable SLURM support.