samtools-software
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Table of Contents
samtools
samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
- Version: 1.2
- Added: February, 2015
- Link: http://www.htslib.org/
Usage
Show all available versions of samtools:
$ module avail samtools
Load a particular version of samtools:
$ module load samtools/1.2
Installation
Notes from the sysadmin during installation:
$ git clone git@github.com:samtools/htslib.git $ git clone git@github.com:samtools/samtools.git $ cd samtools $ git checkout 1.2 $ sudo mkdir -p /export/apps/samtools/1.2/ $ sudo chown joguya:joguya /export/apps/samtools/1.2/ $ make $ make prefix=/export/apps/samtools/1.2/ install $ sudo chown -R root:root /export/apps/samtools/1.2/
samtools-software.1433868095.txt.gz · Last modified: 2015/06/09 16:41 by aorth