samtools-software
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samtools-software [2015/06/09 16:41] – aorth | samtools-software [2017/02/05 11:38] – joguya | ||
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samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. | samtools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. | ||
- | * Version: 1.2 | + | * Latest |
+ | * Updated: February, 2017 | ||
* Added: February, 2015 | * Added: February, 2015 | ||
* Link: http:// | * Link: http:// | ||
- | ==== Usage ==== | + | ===== Usage ===== |
Show all available versions of samtools: | Show all available versions of samtools: | ||
Line 13: | Line 14: | ||
Load a particular version of samtools: | Load a particular version of samtools: | ||
- | < | + | < |
- | ==== Installation ==== | + | ===== Installation |
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ git clone git@github.com:samtools/ | + | $ cd /tmp |
- | $ cd samtools | + | $ wget -qO- " |
- | $ git checkout | + | $ cd samtools-1.3.1/ |
- | $ sudo mkdir -p / | + | $ scl enable devtoolset-2 bash |
- | $ sudo chown joguya: | + | $ sudo mkdir / |
- | $ make | + | $ sudo chown -R joguya: |
- | $ make prefix=/ | + | $ ./configure --enable-plugins --enable-libcurl --with-plugin-path=$PWD/ |
- | $ sudo chown -R root:root / | + | $ make all install-htslib |
+ | $ make install install-htslib | ||
+ | $ sudo chown -R root:root / | ||
+ | </ |
samtools-software.txt · Last modified: 2022/06/23 09:35 by aorth