raxml-software
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Table of Contents
RAxML
RAxML 8.0.23
Information
- Version: 8.0.23
- Added: June, 2011
- Updated: May 27, 2014
Usage
See versions of RAxML which are available
module avail RAxML
Installation
Notes from the sysadmin during installation:
git clone https://github.com/stamatak/standard-RAxML.git cd standard-RAxML scl enable devtoolset-1.1 bash git checkout v8.0.23 make -f Makefile.AVX.gcc rm *.o make -f Makefile.AVX.PTHREADS.gcc sudo mkdir -p /export/apps/RAxML/8.0.23/bin sudo cp raxmlHPC-* /export/apps/RAxML/8.0.23/bin/
RAxML 8.1.9
Information:
- Version: 8.1.9
- Added: December, 2014
Installation Notes
- Download pandaseq 2.8.1, create version specific dir in /export/apps/pandaseq/, compile & install it.
git clone https://github.com/stamatak/standard-RAxML.git cd standard-RAxML scl enable devtoolset-1.1 bash git checkout v8.1.9 make -f Makefile.gcc rm *.o make -f Makefile.SSE3.gcc rm *.o make -f Makefile.AVX.gcc rm *.o make -f Makefile.PTHREADS.gcc rm *.o make -f Makefile.AVX.PTHREADS.gcc rm *.o make -f Makefile.SSE3.PTHREADS.gcc rm *.o module load openmpi/1.8.2 make -f Makefile.MPI.gcc rm *.o make -f Makefile.SSE3.MPI.gcc rm *.o make -f Makefile.AVX.MPI.gcc rm *.o sudo mkdir -p /export/apps/RAxML/8.1.9/bin sudo cp raxmlHPC* /export/apps/RAxML/8.1.9/bin/
- RAxML/8.1.9 module file:
#%Module1.0 ##################################################################### ## ## RAxML Modulefile ## by James Oguya, <j.oguya@cgiar.org> ## December, 2014 ## set appname RAxML set version 8.1.9 set prefix /export/apps/${appname}/${version} set exec_prefix ${prefix}/bin conflict RAxML prepend-path PATH ${exec_prefix}
raxml-software.1418033571.txt.gz · Last modified: 2014/12/08 10:12 by joguya