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raxml-software

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RAxML

RAxML 8.0.23

Information

Usage

See versions of RAxML which are available

module avail RAxML

Installation

Notes from the sysadmin during installation:

git clone https://github.com/stamatak/standard-RAxML.git
cd standard-RAxML
scl enable devtoolset-1.1 bash
git checkout v8.0.23
make -f Makefile.AVX.gcc
rm *.o
make -f Makefile.AVX.PTHREADS.gcc
sudo mkdir -p /export/apps/RAxML/8.0.23/bin
sudo cp raxmlHPC-* /export/apps/RAxML/8.0.23/bin/

RAxML 8.1.9

Information:

Installation Notes

  • Download pandaseq 2.8.1, create version specific dir in /export/apps/pandaseq/, compile & install it.
    git clone https://github.com/stamatak/standard-RAxML.git
    cd standard-RAxML
    scl enable devtoolset-1.1 bash
    git checkout v8.1.9
    make -f Makefile.gcc
    rm *.o
    make -f Makefile.SSE3.gcc
    rm *.o
    make -f Makefile.AVX.gcc
    rm *.o
    make -f Makefile.PTHREADS.gcc
    rm *.o
    make -f Makefile.AVX.PTHREADS.gcc
    rm *.o
    make -f Makefile.SSE3.PTHREADS.gcc
    rm *.o
    module load openmpi/1.8.2
    make -f Makefile.MPI.gcc
    rm *.o
    make -f Makefile.SSE3.MPI.gcc
    rm *.o
    make -f Makefile.AVX.MPI.gcc
    rm *.o
    sudo mkdir -p /export/apps/RAxML/8.1.9/bin
    sudo cp raxmlHPC* /export/apps/RAxML/8.1.9/bin/
  • RAxML/8.1.9 module file:
    #%Module1.0
    #####################################################################
    ##
    ## RAxML Modulefile
    ## by James Oguya, <j.oguya@cgiar.org>
    ## December, 2014
    ##
    
    set     appname         RAxML
    set     version         8.1.9
    set     prefix          /export/apps/${appname}/${version}
    set     exec_prefix     ${prefix}/bin
    
    conflict    RAxML
    
    prepend-path    PATH            ${exec_prefix}
raxml-software.1418033571.txt.gz · Last modified: 2014/12/08 10:12 by joguya