quast-software
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Table of Contents
quast
QUAST (QUality ASsessment Tool) evaluates genome assemblies by computing various metrics.
Information
- Latest Version: 3.0
- Added: September, 2014
- Updated: July, 2015
Usage
See versions of quast which are available:
$ module avail quast
Installation
Notes from the sysadmin during installation:
$ wget "http://downloads.sourceforge.net/project/quast/quast-3.0.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fquast%2Ffiles%2F&ts=1437982260&use_mirror=liquidtelecom" -O quast-3.0.tar.gz $ tar -xvf quast-3.0.tar.gz $ sudo mkdir -p /export/apps/quast/3.0 $ sudo cp -rv quast-3.0/* /export/apps/quast/3.0 $ sudo chown -R joguya:joguya /export/apps/quast/3.0 $ cd /export/apps/quast/3.0 $ module load python/2.7.8 $ cd libs/MUMmer3.23-linux $ make $ cd - $ ./metaquast.py --test $ sudo chown -R root:root /export/apps/quast/3.0
Running
After loading the module, consult the built-in help:
$ metaquast.py --help
quast-software.1507093404.txt.gz · Last modified: 2017/10/04 05:03 by aorth