User Tools

Site Tools


quast-software

This is an old revision of the document!


quast

Information

Usage

See versions of quast which are available:

$ module avail quast

Installation

Notes from the sysadmin during installation:

wget "http://downloads.sourceforge.net/project/quast/quast-3.0.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fquast%2Ffiles%2F&ts=1437982260&use_mirror=liquidtelecom" -O quast-3.0.tar.gz
tar -xvf quast-3.0.tar.gz
sudo mkdir -p /export/apps/quast/3.0
sudo cp -rv quast-3.0/* /export/apps/quast/3.0
sudo chown -R joguya:joguya /export/apps/quast/3.0
cd /export/apps/quast/3.0
module load python/2.7.8
cd libs/MUMmer3.23-linux
make
cd -
./metaquast.py --test
sudo chown -R root:root /export/apps/quast/3.0

Running

After loading the module, consult the built-in help:

$ metaquast.py --help
quast-software.1437985532.txt.gz · Last modified: 2015/07/27 08:25 by joguya