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quast-software

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quast

Information

Usage

See versions of quast which are available:

$ module avail quast

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget 'http://downloads.sourceforge.net/project/quast/quast-2.3.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fquast%2Ffiles%2F&ts=1411971659&use_mirror=tenet' -O quast-2.3.tar.gz
$ tar xf quast-2.3.tar.gz
$ sudo mkdir -p /export/apps/quast
$ sudo cp -rv quast-2.3 /export/apps/quast/2.3
$ sudo chown -R aorth:aorth /export/apps/quast/2.3
$ cd /export/apps/quast/2.3
$ module load python/2.7.6
$ ./metaquast.py --test
$ cd libs/MUMmer3.23-linux
$ make
$ cd ../..
$ ./metaquast.py --test
$ sudo chown -R root:root /export/apps/quast/2.3

Running

After loading the module, consult the built-in help:

$ metaquast.py --help
quast-software.1433867777.txt.gz · Last modified: 2015/06/09 16:36 by aorth