quast-software
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quast-software [2017/10/04 05:03] – aorth | quast-software [2020/04/07 08:27] (current) – aorth | ||
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====== quast ====== | ====== quast ====== | ||
QUAST (QUality ASsessment Tool) evaluates genome assemblies by computing various metrics. | QUAST (QUality ASsessment Tool) evaluates genome assemblies by computing various metrics. | ||
+ | |||
===== Information ===== | ===== Information ===== | ||
- | * Latest Version: | + | * Latest Version: |
* Added: September, 2014 | * Added: September, 2014 | ||
- | * Updated: | + | * Updated: |
* Link: http:// | * Link: http:// | ||
Line 12: | Line 13: | ||
See versions of quast which are available: | See versions of quast which are available: | ||
< | < | ||
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ quast.py --help</ | ||
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ tar -xvf quast-3.0.tar.gz | + | $ wget https:// |
- | $ sudo mkdir -p / | + | $ tar xf quast-5.0.2.tar.gz |
- | $ sudo cp -rv quast-3.0/ | + | $ cd quast-5.0.2 |
- | $ sudo chown -R joguya: | + | $ sudo mkdir -p / |
- | $ cd / | + | $ sudo chown aorth / |
- | $ module load python/2.7.8 | + | $ python3 |
- | $ cd libs/ | + | $ source |
- | $ make | + | $ pip install --upgrade pip setuptools |
- | $ cd - | + | $ pip install matplotlib |
- | $ ./metaquast.py --test | + | $ ./setup.py install_full |
- | $ sudo chown -R root:root / | + | $ ./setup.py test |
+ | $ sudo chown -R root:root / | ||
- | ===== Running ===== | + | You can test the installation using the test data from the source tarball: |
- | After loading | + | |
- | < | + | < |
quast-software.1507093404.txt.gz · Last modified: 2017/10/04 05:03 by aorth