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quast-software [2015/07/27 08:38]
joguya
quast-software [2017/10/04 05:03]
aorth
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 ====== quast ====== ====== quast ======
-QUAST(QUality ASsessment Tool)evaluates genome assemblies by computing various metrics.+QUAST (QUality ASsessment Tool) evaluates genome assemblies by computing various metrics.
 ===== Information ===== ===== Information =====
  
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   * Added: September, 2014   * Added: September, 2014
   * Updated: July, 2015   * Updated: July, 2015
-  * Link: http://bioinf.spbau.ru/en/quast+  * Link: http://quast.sourceforge.net/quast
  
 ===== Usage ===== ===== Usage =====
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>wget "http://downloads.sourceforge.net/project/quast/quast-3.0.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fquast%2Ffiles%2F&ts=1437982260&use_mirror=liquidtelecom" -O quast-3.0.tar.gz +<code>wget "http://downloads.sourceforge.net/project/quast/quast-3.0.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fquast%2Ffiles%2F&ts=1437982260&use_mirror=liquidtelecom" -O quast-3.0.tar.gz 
-tar -xvf quast-3.0.tar.gz +tar -xvf quast-3.0.tar.gz 
-sudo mkdir -p /export/apps/quast/3.0 +sudo mkdir -p /export/apps/quast/3.0 
-sudo cp -rv quast-3.0/* /export/apps/quast/3.0 +sudo cp -rv quast-3.0/* /export/apps/quast/3.0 
-sudo chown -R joguya:joguya /export/apps/quast/3.0 +sudo chown -R joguya:joguya /export/apps/quast/3.0 
-cd /export/apps/quast/3.0 +cd /export/apps/quast/3.0 
-module load python/2.7.8 +module load python/2.7.8 
-cd libs/MUMmer3.23-linux +cd libs/MUMmer3.23-linux 
-make +make 
-cd - +cd - 
-./metaquast.py --test +./metaquast.py --test 
-sudo chown -R root:root /export/apps/quast/3.0 +sudo chown -R root:root /export/apps/quast/3.0</code>
-</code>+
  
 ===== Running ===== ===== Running =====
quast-software.txt · Last modified: 2020/04/07 08:27 by aorth