User Tools

Site Tools


prodigal-software

This is an old revision of the document!


prodigal

Fast, reliable protein-coding gene prediction for prokaryotic genomes.

Information

Usage

See which versions of prodigal are available:

$ module avail prodigal

Load one version into your environment and run it:

$ module load prodigal/git-004218fb
$ prodigal

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/hyattpd/Prodigal.git
$ cd Prodigal
$ scl enable devtoolset-7 bash
$ make -j2
$ sudo mkdir -p /export/apps/prodigal/git-004218fb/bin
$ sudo cp LICENSE README /export/apps/prodigal/git-004218fb
$ sudo cp prodigal /export/apps/prodigal/git-004218fb/bin
prodigal-software.1584025338.txt.gz · Last modified: 2020/03/12 15:02 by aorth