polyphen-software
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Table of Contents
PolyPhen-2
PolyPhen-2 (Polymorphism Phenotyping v2) is a software tool which predicts possible impact of amino acid substitutions on the structure and function of human proteins using straightforward physical and evolutionary comparative considerations.
Information
- Latest version: 2.2.2
- Added: March, 2017
Usage
See versions of polyphen which are available:
$ module avail polyphen
Load polyphen:
$ module load polyphen
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget -qO- http://genetics.bwh.harvard.edu/pph2/dokuwiki/_media/polyphen-2.2.2r405c.tar.gz | tar xzv $ cd polyphen-2.2.2/ $ scl enable devtoolset-3 bash $ module load perl/5.22.3 $ cpanm DBD::SQLite $ sudo mkdir -p /export/apps/polyphen/2.2.2 $ sudo chown -R joguya:joguya /export/apps/polyphen/2.2.2 $ ./configure $ make download $ make $ make install $ cp -r . /export/apps/polyphen/2.2.2 $ sudo chown -R root:root /export/apps/polyphen/2.2.2
polyphen-software.1489062516.txt.gz · Last modified: 2017/03/09 12:28 by joguya