PLINK is a whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.

• Version: 1.9
• Added: November, 2015
• Link: https://www.cog-genomics.org/plink2/

See versions of plink which are available:

$ module avail plink

Load and run plink:

$ module load plink/1.9
$ plink

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://www.cog-genomics.org/static/bin/plink151123/plink_linux_x86_64.zip
$ mkdir plink-1.90
$ cd plink-1.90
$ unzip ../plink_linux_x86_64.zip
$ sudo mkdir /export/apps/plink/1.9
$ sudo cp . /export/apps/plink/1.9