picard-software
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Table of Contents
Picard tools
A set of Java command line tools for manipulating high-throughput sequencing data (HTS) data and formats.
Information
- Version: 2.26.1
- Added: March, 2015
- Updated: September, 2021
Usage
See versions of picard which are available:
$ module avail picard
Run picard:
$ java -jar /export/apps/picard/2.26.1/picard.jar
Note: Picard tools are CPU hungry; please use a minimum of 6 CPUs in your batch job when running tools from this suite.
Note: Picard makes use of temporary storage in /tmp
during analysis by default. You will probably run into "No space left on device" errors unless you specify a different temp directory, for example: TMP_DIR=/var/scratch
.
Installation
Notes from the sysadmin during installation:
$ wget https://github.com/broadinstitute/picard/releases/download/2.26.1/picard.jar $ sudo mkdir -p /export/apps/picard/2.26.1 $ sudo cp picard.jar /export/apps/picard/2.26.1
picard-software.1630840547.txt.gz · Last modified: 2021/09/05 11:15 by aorth