Pandaseq is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.

• Version: 2.7
• Added: October, 2014
• Link: https://github.com/neufeld/pandaseq/

• module avail pandaseq

• Load pandaseq module:

  module load pandaseq/2.7
  man pandaseq

• clone repo from github

  cd /home/joguya/src
  git clone https://github.com/neufeld/pandaseq.git
  cd pandaseq

• generate configs files

  ./autogen.sh

• create the directory(/export/apps/pandaseq/2.7) where we're going to install pandaseq:

  sudo mkdir -p /export/apps/pandaseq/2.7/
  sudo chown joguya:joguya /export/apps/pandaseq/2.7 

• run configure script & provide the prefix(installation target dir)

  ./configure --prefix=/export/apps/pandaseq/2.7/

• create make file & install

  make
  make install 

• change ownership back to root

  sudo chown -R root:root /export/apps/pandaseq/2.7/