pandaseq-software
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Table of Contents
Pandaseq
Pandaseq is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.
Information
- Version: 2.7
- Added: October, 2014
Usage
Show available version
module avail pandaseq
Show manpages
- Load pandaseq module:
module load pandaseq/2.7
man pandaseq
Installation
- clone repo from github
cd /home/joguya/src git clone https://github.com/neufeld/pandaseq.git cd pandaseq
- generate configs files
./autogen.sh
- create the directory(/export/apps/pandaseq/2.7) where we're going to install pandaseq:
sudo mkdir -p /export/apps/pandaseq/2.7/ sudo chown joguya:joguya /export/apps/pandaseq/2.7
- run configure script & provide the prefix(installation target dir)
./configure --prefix=/export/apps/pandaseq/2.7/
- create make file & install
make make install
- change ownership back to root
sudo chown -R root:root /export/apps/pandaseq/2.7/
pandaseq-software.1412689239.txt.gz · Last modified: 2014/10/07 13:40 by joguya