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nquire-software [2021/05/10 11:45] (current)
aorth created
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 +====== nQuire ======
 +A statistical framework for ploidy estimation using NGS short-read data.
  
 +===== Information =====
 +
 +  * Version: git-a990a88e
 +  * Added: May, 2021
 +  * Link: https://github.com/clwgg/nQuire
 +
 +===== Usage =====
 +
 +See which versions of nQuire are available:
 +<code>$ module avail nQuire</code>
 +
 +Load one version into your environment and run it:
 +<code>$ module load nQuire/git-a990a88e
 +$ nQuire</code>
 +
 +Note: you can control the number of CPU threads used by nQuire with the ''-t'' option. Please make sure to match this with the number of threads you specified in your SLURM SBATCH allocation.
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:
 +
 +<code>$ cd /tmp
 +$ git clone --recursive https://github.com/clwgg/nQuire
 +$ cd nQuire
 +$ make submodules
 +$ make
 +$ sudo mkdir -p /export/apps/nQuire/git-a990a88e/bin
 +$ sudo cp nQuire /export/apps/nQuire/git-a990a88e/bin
 +$ sudo cp README.org LICENSE /export/apps/nQuire/git-a990a88e</code>
nquire-software.txt · Last modified: 2021/05/10 11:45 by aorth