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Nextflow is a bioinformatics workflow manager that enables the development of portable and reproducible workflows. It supports deploying workflows on a variety of execution platforms including local, HPC schedulers, AWS Batch, Google Genomics Pipelines, and Kubernetes. Additionally, it provides support for manage your workflow dependencies through built-in support for Conda, Docker, Singularity, and Modules.



See versions of nextflow which are available:

$ module avail nextflow

Load one version into your environment and run it:

$ module load kat/19.10.0
$ nextflow

See the nextflow documentation for information about how to use it.


Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/nextflow/19.10.0
$ sudo wget -O /export/apps/nextflow/19.10.0/bin/nextflow
$ sudo chmod +x /export/apps/nextflow/19.10.0/bin/nextflow
nextflow-software.1580917908.txt.gz · Last modified: 2020/02/05 15:51 by aorth