Differences

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--- nextclade-software [2021/02/15 10:46] – aorth
+++ nextclade-software [2023/02/23 12:11] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 0.12.0
+  * Version: 2.11.0
   * Added: February, 2021
+  * Updated: February, 2023
   * Link: https://github.com/nextstrain/nextclade
 ===== Usage =====
-See versions of nextclade which are available:
+See versions which are available:
 <code>$ module avail nextclade</code>
 Load one version into your environment and run it:
-<code>$ module load nextclade/0.12.0
+<code>$ module load nextclade/2.11.0
-$ nextclade.js</code>
+$ nextclade</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ sudo yum install rh-nodejs12-nodejs.x86_64
+<code>$ sudo mkdir -p /export/apps/nextclade/2.11.0/bin
-$ cd /tmp
+$ sudo wget https://github.com/nextstrain/nextclade/releases/download/2.11.0/nextclade-x86_64-unknown-linux-gnu -O /export/apps/nextclade/2.11.0/bin/nextclade
-$ git clone https://github.com/nextstrain/nextclade.git
+$ sudo chmod +x /export/apps/nextclade/2.11.0/bin/nextclade</code>
-$ cd nextclade
-$ git checkout 0.12.0
-$ cd packages/web
-$ cp .env.example .env
-$ export PATH=$PATH:/opt/rh/rh-nodejs12/root/usr/bin
-$ npm config set cache /tmp/aorth-npm
-$ npm install yarn
-$ npx yarn cli:prod:build
-$ sudo mkdir -p /export/apps/nextclade/0.12.0/bin
-$ sudo cp -r ../cli/dist/* /export/apps/nextclade/0.12.0/bin</code>
-**Note:** nextclade's command line utility is written in JavaScript so we need Node.js to install it. This requires a bit of extra work to make sure that npm doesn't write thousands of packages to its cache on our network-based home directory.
+**Note**: nextclade was previously distributed as a Javascript program, but it seems to have been ported to C++ and is now a standalone executable.