nextalign-software
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nextalign
Nextalign is a viral genome sequence alignment algorithm used in Nextclade, ported to C++ and made into the standalone command-line tool.
Nextalign performs pairwise alignment of provided sequences against a given reference sequence using banded local alignment algorithm with affine gap-cost. Band width and rough relative positions are determined through seed matching.
Information
- Version: 0.1.7
- Added: March, 2021
Usage
See versions of nextalign which are available:
$ module avail nextalign
Load one version into your environment and run it:
$ module load nextalign/0.1.7 $ nextalign
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/nextstrain/nextclade/releases/download/nextalign-0.1.7/nextalign-Linux-x86_64 $ chmod +x nextalign-Linux-x86_64 $ sudo mkdir -p /export/apps/nextalign/0.1.7/bin $ sudo cp nextalign-Linux-x86_64 /export/apps/nextalign/0.1.7/bin/nextalign
nextalign-software.1615804290.txt.gz · Last modified: 2021/03/15 10:31 by aorth