Differences

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--- mummer-software [2017/09/19 12:45] – aorth
+++ mummer-software [2020/11/11 11:26] (current) – aorth
@@ Line 1: / Line 1: @@
 ====== MUMmer ======
-MUMmer is a versatil alignment tool for DNA and protein sequences.
+MUMmer is a versatile alignment tool for DNA and protein sequences.
 ===== Information =====
-  * Latest version: 3.23
+  * Latest version: 4.0.0rc1
   * Added: October, 2010
-  * Updated: September, 2017
+  * Updated: November, 2020
-  * Link: http://mummer.sourceforge.net/
+  * Link: https://github.com/mummer4/mummer
 ===== Usage =====
-See versions of MUMmer which are available:
+See versions which are available:
-<code>$ module avail MUMmer</code>
+<code>$ module avail mummer</code>
-Load one version into your environment:
+Load one version into your environment and run it:
-<code>$ module load MUMmer/3.23</code>
+<code>$ module load mummer/4.0.0rc1
+$ mummer</code>
 ===== Installation ======
@@ Line 21: / Line 22: @@
 <code>$ cd /tmp
-$ wget 'https://downloads.sourceforge.net/project/mummer/mummer/3.23/MUMmer3.23.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fmummer%2F&ts=1505571212&use_mirror=netix' -O MUMmer3.23.tar.gz
+$ cd https://github.com/mummer4/mummer/releases/download/v4.0.0rc1/mummer-4.0.0rc1.tar.gz
-$ tar xf MUMmer3.23.tar.gz
+$ tar xf mummer-4.0.0rc1.tar.gz
-# the make process hard-codes some perl paths, so copy the source to the place where you want the software installed before compiling
+$ cd mummer-4.0.0rc1
-$ sudo mv MUMmer3.23 /export/apps/MUMmer/3.23
+$ ./configure --prefix=/export/apps/mummer/4.0.0rc1
-$ cd /export/apps/MUMmer/3.23
+$ make
-$ scl enable devtoolset-4 bash
+$ sudo mkdir -p /export/apps/mummer/4.0.0rc1
-$ make CPPFLAGS="-O3 -DSIXTYFOURBITS"
+$ sudo chown aorth /export/apps/mummer/4.0.0rc1
-$ sudo chown -R root:root /export/apps/MUMmer/3.23</code>
+$ make install
+$ sudo chown -R root:root /export/apps/mummer/4.0.0rc1</code>