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mkatari-bioinformatics-august-2013 [2014/08/24 11:12] – mkatarimkatari-bioinformatics-august-2013 [2015/05/21 13:38] – mkatari
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   * SNP analysis   * SNP analysis
           * [[https://drive.google.com/a/nyu.edu/file/d/0B172nc4dAaaOaDVMUTg5anpmMGs/edit?usp=sharing|Using mpileup on Samtools]]           * [[https://drive.google.com/a/nyu.edu/file/d/0B172nc4dAaaOaDVMUTg5anpmMGs/edit?usp=sharing|Using mpileup on Samtools]]
 +          * Running samtools mpileup [[mkatari-bioinformatics-august-2013-bioinformatics-august-2013-mpileup|mpileup notes]]
           * Preparing files for GATK and running GATK [[mkatari-bioinformatics-august-2013-GATKnotes|GATK notes]]           * Preparing files for GATK and running GATK [[mkatari-bioinformatics-august-2013-GATKnotes|GATK notes]]
 +          * Getting snps from a specific region [[mkatari-bioinformatics-august-2013-VCFregion|VCF region]]
  
   * Visualizing your alignments   * Visualizing your alignments
mkatari-bioinformatics-august-2013.txt · Last modified: 2017/01/25 05:13 by mkatari