mkatari-bioinformatics-august-2013
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mkatari-bioinformatics-august-2013 [2014/06/09 07:44] – mkatari | mkatari-bioinformatics-august-2013 [2014/06/10 08:19] – mkatari | ||
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* More notes on shell scripts and writing SLURM batch files [[mkatari-bioinformatics-august-2013-more-slurm|More Slurm]] | * More notes on shell scripts and writing SLURM batch files [[mkatari-bioinformatics-august-2013-more-slurm|More Slurm]] | ||
* [[mkatari-bioinformatics-august-2013-introLinuxNotes|Linux notes]] | * [[mkatari-bioinformatics-august-2013-introLinuxNotes|Linux notes]] | ||
+ | * How to use Screen [[mkatari-bioinformatcs-august-2013-ScreenNotes|Screen Notes]] | ||
+ | | ||
* Introduction to Sequence Technology | * Introduction to Sequence Technology | ||
* [[https:// | * [[https:// | ||
* [[http:// | * [[http:// | ||
* [[http:// | * [[http:// | ||
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* Introduction to Sequence Alignment | * Introduction to Sequence Alignment | ||
* [[https:// | * [[https:// | ||
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* [[http:// | * [[http:// | ||
* [[http:// | * [[http:// | ||
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+ | * SNP analysis | ||
+ | * [[https:// | ||
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* Visualizing your alignments | * Visualizing your alignments | ||
* [[mkatari-bioinformatics-august-2013-IGVnotes|IGVnotes]] | * [[mkatari-bioinformatics-august-2013-IGVnotes|IGVnotes]] | ||
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* Introduction to Mapping and Sequence Assembly | * Introduction to Mapping and Sequence Assembly | ||
* [[https:// | * [[https:// | ||
* [[http:// | * [[http:// | ||
* [[http:// | * [[http:// | ||
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* Introduction to RNA-seq | * Introduction to RNA-seq | ||
* [[https:// | * [[https:// | ||
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Manny' | Manny' | ||
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* R Objects and Read/Write Files | * R Objects and Read/Write Files | ||
* [[https:// | * [[https:// | ||
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* [[https:// | * [[https:// | ||
* [[https:// | * [[https:// | ||
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* Plotting and Writing Functions in R | * Plotting and Writing Functions in R | ||
* [[https:// | * [[https:// | ||
* [[https:// | * [[https:// | ||
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* Inferential Statistics using R | * Inferential Statistics using R | ||
* [[https:// | * [[https:// | ||
* [[https:// | * [[https:// | ||
* [[mkatari-bioinformatics-august-2013-volcano-plot|Volcano plot]] | * [[mkatari-bioinformatics-august-2013-volcano-plot|Volcano plot]] | ||
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* Data cleaning and working with packages | * Data cleaning and working with packages | ||
* [[http:// | * [[http:// | ||
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* [[mkatari-bioinformatics-august-2013-cleanSNP |Clean SNP data]] | * [[mkatari-bioinformatics-august-2013-cleanSNP |Clean SNP data]] | ||
* [[mkatari-bioinformatics-august-2013-convert-SNP|Convert SNP File format]] | * [[mkatari-bioinformatics-august-2013-convert-SNP|Convert SNP File format]] | ||
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* Differential Gene Expression using DESeq | * Differential Gene Expression using DESeq | ||
* [[mkatari-bioinformatics-august-2013-DESeq|DESeq]] | * [[mkatari-bioinformatics-august-2013-DESeq|DESeq]] | ||
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* Clustering | * Clustering | ||
* [[https:// | * [[https:// | ||
* [[mkatari-bioinformatics-august-2013-clustering|Clustering]] | * [[mkatari-bioinformatics-august-2013-clustering|Clustering]] | ||
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* GeneSet Enrichment Analysis | * GeneSet Enrichment Analysis | ||
* [[https:// | * [[https:// | ||
* [[mkatari-bioinformatics-august-2013-LoadingPhytozome|Loading Phytozome data]] | * [[mkatari-bioinformatics-august-2013-LoadingPhytozome|Loading Phytozome data]] |
mkatari-bioinformatics-august-2013.txt · Last modified: 2017/01/25 05:13 by mkatari