ILRI Research Computing

User Tools

Site Tools

You are here: start » mkatari-bioinformatics-august-2013
mkatari-bioinformatics-august-2013

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
Next revisionBoth sides next revision
mkatari-bioinformatics-august-2013 [2014/06/09 07:44] – mkatarimkatari-bioinformatics-august-2013 [2014/06/10 08:17] – mkatari
Line 10: Line 10:
           * More notes on shell scripts and writing SLURM batch files [[mkatari-bioinformatics-august-2013-more-slurm|More Slurm]]           * More notes on shell scripts and writing SLURM batch files [[mkatari-bioinformatics-august-2013-more-slurm|More Slurm]]
           * [[mkatari-bioinformatics-august-2013-introLinuxNotes|Linux notes]]            * [[mkatari-bioinformatics-august-2013-introLinuxNotes|Linux notes]] 
 +          * How to use Screen [[mkatari-bioinformatcs-august-2013-ScreenNotes|Screen Notes]]
   * Introduction to Sequence Technology   * Introduction to Sequence Technology
           * [[https://docs.google.com/file/d/0B172nc4dAaaOVGZIQXRWUlRmU1E/edit?usp=sharing|ppt]]           * [[https://docs.google.com/file/d/0B172nc4dAaaOVGZIQXRWUlRmU1E/edit?usp=sharing|ppt]]
Line 20: Line 21:
           * [[http://samtools.sourceforge.net/samtools.shtml|Samtools]]           * [[http://samtools.sourceforge.net/samtools.shtml|Samtools]]
           * [[http://mummer.sourceforge.net/manual/|MUMmer]]           * [[http://mummer.sourceforge.net/manual/|MUMmer]]
 +  * SNP analysis
 +          * [[https://drive.google.com/a/nyu.edu/file/d/0B172nc4dAaaOaDVMUTg5anpmMGs/edit?usp=sharing|Using mpileup on Samtools]]
 +
   * Visualizing your alignments   * Visualizing your alignments
           * [[mkatari-bioinformatics-august-2013-IGVnotes|IGVnotes]]           * [[mkatari-bioinformatics-august-2013-IGVnotes|IGVnotes]]
mkatari-bioinformatics-august-2013.txt · Last modified: 2017/01/25 05:13 by mkatari