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This shows you the differences between two versions of the page.

--- mkatari-bioinformatics-august-2013 [2014/06/05 05:11] – mkatari
+++ mkatari-bioinformatics-august-2013 [2014/06/05 05:16] – mkatari
@@ Line 34: / Line 34: @@
 Manny's R Lectures:
-  * R Objects and Read/Write Files -- [[https://docs.google.com/file/d/0B172nc4dAaaOZENzZGFNVEp5WTA/edit?usp=sharing|ppt]] -- [[https://docs.google.com/file/d/0B172nc4dAaaOS29XcEJyU0h0SlU/edit?usp=sharing|Exercise 1]] -- [[https://docs.google.com/file/d/0B172nc4dAaaOTElDZkIwTUdqWU0/edit?usp=sharing|example.txt]] -- [[https://docs.google.com/file/d/0B172nc4dAaaOemFPcWprQm9IeWc/edit?usp=sharing|example.csv]]
+  * R Objects and Read/Write Files
-  * Plotting and Writing Functions in R -- [[https://docs.google.com/file/d/0B172nc4dAaaOZ1ZoekZwcWZtT28/edit?usp=sharing|ppt]] -- [[https://docs.google.com/file/d/0B172nc4dAaaOSS1hOFBxMWk0eEE/edit?usp=sharing|breast cancer dataset]]
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOZENzZGFNVEp5WTA/edit?usp=sharing|ppt]]
-  * Inferential Statistics using R -- [[https://docs.google.com/file/d/0B172nc4dAaaOQTFjWDJJWGxLUWM/edit?usp=sharing|ppt]] -- [[https://docs.google.com/file/d/0B172nc4dAaaONlZ4QXByRThPNXM/edit?usp=sharing|Normalized Data]] -- [[mkatari-bioinformatics-august-2013-volcano-plot|Volcano plot]]
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOS29XcEJyU0h0SlU/edit?usp=sharing|Exercise 1]]
-  * Data cleaning and working with packages -- [[http://www.bioconductor.org/help/workflows/high-throughput-sequencing/|Next-gen workflow]] -- [[http://bioconductor.org|Bioconductor]] -- [[https://docs.google.com/file/d/0B172nc4dAaaOMG44Zk1BT2NFdkU/edit?usp=sharing| Example file]] -- -- [[mkatari-bioinformatics-august-2013-cleanSNP |Clean SNP data]] -- -- [[mkatari-bioinformatics-august-2013-convert-SNP|Convert SNP File format]]
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOTElDZkIwTUdqWU0/edit?usp=sharing|example.txt]]
-  * Differential Gene Expression using DESeq -- [[mkatari-bioinformatics-august-2013-DESeq|DESeq]]
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOemFPcWprQm9IeWc/edit?usp=sharing|example.csv]]
-  * Clustering -- [[https://docs.google.com/file/d/0B172nc4dAaaOaC16N25EU01iXzg/edit?usp=sharing|ppt]] -- [[mkatari-bioinformatics-august-2013-clustering|Clustering]]
+  * Plotting and Writing Functions in R
-  * GeneSet Enrichment Analysis -- [[https://docs.google.com/file/d/0B172nc4dAaaOcnVlM25nWk1ZVWs/edit?usp=sharing|ppt]] -- [[mkatari-bioinformatics-august-2013-LoadingPhytozome|Loading Phytozome data]]
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOZ1ZoekZwcWZtT28/edit?usp=sharing|ppt]]
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOSS1hOFBxMWk0eEE/edit?usp=sharing|breast cancer dataset]]
+  * Inferential Statistics using R
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOQTFjWDJJWGxLUWM/edit?usp=sharing|ppt]]
+          * [[https://docs.google.com/file/d/0B172nc4dAaaONlZ4QXByRThPNXM/edit?usp=sharing|Normalized Data]]
+          * [[mkatari-bioinformatics-august-2013-volcano-plot|Volcano plot]]
+  * Data cleaning and working with packages
+          * [[http://www.bioconductor.org/help/workflows/high-throughput-sequencing/|Next-gen workflow]]
+          * [[http://bioconductor.org|Bioconductor]]
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOMG44Zk1BT2NFdkU/edit?usp=sharing|Example file]]
+          * [[mkatari-bioinformatics-august-2013-cleanSNP |Clean SNP data]]
+          * [[mkatari-bioinformatics-august-2013-convert-SNP|Convert SNP File format]]
+  * Differential Gene Expression using DESeq
+          * [[mkatari-bioinformatics-august-2013-DESeq|DESeq]]
+  * Clustering
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOaC16N25EU01iXzg/edit?usp=sharing|ppt]]
+          * [[mkatari-bioinformatics-august-2013-clustering|Clustering]]
+  * GeneSet Enrichment Analysis
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOcnVlM25nWk1ZVWs/edit?usp=sharing|ppt]]
+          * [[mkatari-bioinformatics-august-2013-LoadingPhytozome|Loading Phytozome data]]