Differences

This shows you the differences between two versions of the page.

--- mkatari-bioinformatics-august-2013 [2014/06/04 08:09] – mkatari
+++ mkatari-bioinformatics-august-2013 [2014/06/04 08:10] – mkatari
@@ Line 4: / Line 4: @@
   * Introduction to Linux -- [[https://docs.google.com/file/d/0B172nc4dAaaOOUdvVlowZHo4R0E/edit?usp=sharing|ppt]] -- [[mkatari-bioinformatics-august-2013-introLinuxNotes|Linux notes]]
   * Introduction to Sequence Technology -- [[https://docs.google.com/file/d/0B172nc4dAaaOVGZIQXRWUlRmU1E/edit?usp=sharing|ppt]] -- [[http://hannonlab.cshl.edu/fastx_toolkit/commandline.html|Fastx toolkit]] -- [[http://www.bioinformatics.babraham.ac.uk/projects/fastqc/|Fastqc]]
-  * Introduction to Sequence Alignment -- [[https://docs.google.com/file/d/0B172nc4dAaaOcHlWZHM5WUw5SFE/edit?usp=sharing|ppt]] -- [[mkatari-bioinformatics-august-2013-BlastNotes|Blast notes]] -- [[mkatari-bioinformatics-august-2013-BowtieNotes|Bowtie notes]] -- [[http://samtools.sourceforge.net/samtools.shtml|Samtools]]
+  * Introduction to Sequence Alignment
-      * [[http://mummer.sourceforge.net/manual/|MUMmer]]
+          * [[https://docs.google.com/file/d/0B172nc4dAaaOcHlWZHM5WUw5SFE/edit?usp=sharing|ppt]]
+          * [[mkatari-bioinformatics-august-2013-BlastNotes|Blast notes]]
+          * [[mkatari-bioinformatics-august-2013-BowtieNotes|Bowtie notes]]
+          * [[http://samtools.sourceforge.net/samtools.shtml|Samtools]]
+          * [[http://mummer.sourceforge.net/manual/|MUMmer]]
   * Visualizing your alignments -- [[mkatari-bioinformatics-august-2013-IGVnotes|IGVnotes]]
   * Introduction to Mapping and Sequence Assembly -- [[https://docs.google.com/file/d/0B172nc4dAaaOREpEdVZtSkw5dGs/edit?usp=sharing|ppt]] -- [[http://www.ebi.ac.uk/~zerbino/velvet/Manual.pdf|Velvet Documentation]] -- [[http://seqanswers.com/wiki/ABySS|ABySS]]