Differences

This shows you the differences between two versions of the page.

--- mkatari-bioinformatics-august-2013 [2013/08/29 09:25] – mkatari
+++ mkatari-bioinformatics-august-2013 [2013/08/29 09:31] – mkatari
@@ Line 6: / Line 6: @@
   * Introduction to Sequence Alignment -- [[https://docs.google.com/file/d/0B172nc4dAaaOcHlWZHM5WUw5SFE/edit?usp=sharing|ppt]] -- [[mkatari-bioinformatics-august-2013-BlastNotes|Blast notes]] -- [[http://samtools.sourceforge.net/samtools.shtml|Samtools]]
   * Introduction to Mapping and Sequence Assembly -- [[https://docs.google.com/file/d/0B172nc4dAaaOREpEdVZtSkw5dGs/edit?usp=sharing|ppt]] -- [[http://www.ebi.ac.uk/~zerbino/velvet/Manual.pdf|Velvet Documentation]] -- [[http://seqanswers.com/wiki/ABySS|ABySS]]
-  * Introduction to RNA-seq -- [[https://docs.google.com/file/d/0B172nc4dAaaONnVoWWJJdWlkQUU/edit?usp=sharing|ppt]] -- [[http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml|Bowtie2]] -- [[http://tophat.cbcb.umd.edu/manual.shtml|Tophat]] -- [[http://cufflinks.cbcb.umd.edu/manual.html|Cufflinks]] -- [[http://cufflinks.cbcb.umd.edu/manual.html#cuffdiff|CuffDiff]]
+  * Introduction to RNA-seq -- [[https://docs.google.com/file/d/0B172nc4dAaaONnVoWWJJdWlkQUU/edit?usp=sharing|ppt]] -- [[http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml|Bowtie2]] -- [[http://tophat.cbcb.umd.edu/manual.shtml|Tophat]] -- [[http://cufflinks.cbcb.umd.edu/manual.html|Cufflinks]] -- [[http://cufflinks.cbcb.umd.edu/manual.html#cuffdiff|CuffDiff]] -- [[ http://www.bioconductor.org/packages/release/bioc/vignettes/DESeq/inst/doc/DESeq.pdf|DESeq manual]]
 Manny's R Lectures: