mkatari-bioinformatics-august-2013
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- | * [[mkatari-bioinformatics-august-2013-day1|Day 1]] -- Using the cluster | + | |
- | * [[mkatari-bioinformatics-august-2013-day2|Day 2]] -- Using the cluster | + | * Recommended software for Windows machines: [[http:// |
+ | * Recommended software for Apple machines: [[http:// | ||
+ | * [[https:// | ||
+ | * Alan's information about the Cluster [[[[using-the-cluster|Using the cluster]] | ||
+ | * Alan's information about how to use SLURM [[using-slurm|Using SLURM]] | ||
+ | | ||
+ | * Introduction to Sequence Technology | ||
+ | * [[https:// | ||
+ | * [[http:// | ||
+ | * [[http:// | ||
+ | * Introduction to Sequence Alignment | ||
+ | * [[https:// | ||
+ | * [[mkatari-bioinformatics-august-2013-BlastNotes|Blast notes]] | ||
+ | * [[mkatari-bioinformatics-august-2013-BowtieNotes|Bowtie notes]] | ||
+ | * [[http:// | ||
+ | * [[http:// | ||
+ | * Visualizing your alignments | ||
+ | * [[mkatari-bioinformatics-august-2013-IGVnotes|IGVnotes]] | ||
+ | * Introduction to Mapping and Sequence Assembly | ||
+ | * [[https:// | ||
+ | * [[http:// | ||
+ | * [[http:// | ||
+ | * Introduction to RNA-seq | ||
+ | * [[https:// | ||
+ | * [[http:// | ||
+ | * [[http:// | ||
+ | * [[http:// | ||
+ | * [[http:// | ||
+ | * [[ http:// | ||
+ | |||
+ | Manny' | ||
+ | * R Objects and Read/Write Files | ||
+ | * [[https:// | ||
+ | * [[https:// | ||
+ | * [[https:// | ||
+ | * [[https:// | ||
+ | * Plotting and Writing Functions in R | ||
+ | * [[https:// | ||
+ | * [[https:// | ||
+ | * Inferential Statistics using R | ||
+ | * [[https:// | ||
+ | * [[https:// | ||
+ | * [[mkatari-bioinformatics-august-2013-volcano-plot|Volcano plot]] | ||
+ | | ||
+ | * [[http:// | ||
+ | * [[http:// | ||
+ | * [[https:// | ||
+ | | ||
+ | * [[mkatari-bioinformatics-august-2013-convert-SNP|Convert SNP File format]] | ||
+ | * Differential Gene Expression using DESeq | ||
+ | * [[mkatari-bioinformatics-august-2013-DESeq|DESeq]] | ||
+ | * Clustering | ||
+ | * [[https:// | ||
+ | * [[mkatari-bioinformatics-august-2013-clustering|Clustering]] | ||
+ | * GeneSet Enrichment Analysis | ||
+ | * [[https:// | ||
+ | * [[mkatari-bioinformatics-august-2013-LoadingPhytozome|Loading Phytozome data]] |
mkatari-bioinformatics-august-2013.txt · Last modified: 2017/01/25 05:13 by mkatari