Differences

This shows you the differences between two versions of the page.

--- mafft-software [2021/03/15 12:26] – aorth
+++ mafft-software [2023/09/07 09:39] (current) – aorth
@@ Line 4: / Line 4: @@
   * Latest Version: 7.475
   * Added: October, 2011
-  * Updated: March, 2021
+  * Updated: September, 2023
-  * Link: https://mafft.cbrc.jp/alignment/software/
+  * Link: https://mafft.cbrc.jp/alignment/software
 ===== Usage =====
-Show all available versions of mafft:
+Show all available versions:
 <code>$ module avail mafft</code>
-Load a particular version of mafft:
+Load one version into your environment and run it:
-<code>$ module load mafft/7.475</code>
+<code>$ module load mafft/7.505
+$ mafft</code>
 ===== Installation =====
@@ Line 20: / Line 21: @@
 <code>$ cd /tmp
-$ wget https://mafft.cbrc.jp/alignment/software/mafft-7.475-with-extensions-src.tgz
+$ wget https://mafft.cbrc.jp/alignment/software/mafft-7.505-with-extensions-src.tgz
-$ cd mafft-7.475-with-extensions/core
+$ tar xf mafft-7.505-with-extensions-src.tgz
-$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.475/' Makefile
+$ cd mafft-7.505-with-extensions/core
+$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.505/' Makefile
 $ make
-$ sudo mkdir -p /export/apps/mafft/7.475
+$ sudo mkdir -p /export/apps/mafft/7.505
-$ sudo chown aorth /export/apps/mafft/7.475
+$ sudo chown aorth /export/apps/mafft/7.505
 $ make install
 $ cd ../extensions
-$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.475/' Makefile
+$ vim Makefile
+$ sed -i 's/PREFIX = \/usr\/local/PREFIX = \/export\/apps\/mafft\/7.505/' Makefile
 $ make
 $ make install
-$ sudo chown -R root:root /export/apps/mafft/7.475</code>
+$ sudo chown -R root:root /export/apps/mafft/7.505</code>