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LoRDEC processes data coming from high throughput sequencing machines of the second and third generations. These data are called sequencing reads, or simply reads for short. Technically speaking it processes short reads and long reads to correct errors in the long reads.



See versions which are available:

$ module avail lordec

Load one version into your environment and run it:

$ module load lordec/0.9
$ lordec-correct
$ lordec-trim


Notes from the sysadmin during installation:

$ cd /tmp
$ wget
$ tar xf lordec-src_0.9.tar.bz2
$ cd lordec-src_0.9
$ sed -i -e 's/cmake/cmake3/' Makefile
$ make clean all -j4
$ sudo mkdir -p /export/apps/lordec/0.9/bin
$ sudo cp lordec-build-SR-graph lordec-correct lordec-stat lordec-trim lordec-trim-split /export/apps/lordec/0.9/bin
$ sudo cp LICENSE /export/apps/lordec/0.9
lordec-software.1562682137.txt.gz · Last modified: 2019/07/09 14:22 by aorth