kraken-software
This is an old revision of the document!
Table of Contents
kraken
A taxonomic sequence classifier that assigns taxonomic labels to short DNA reads.
Information
- Version: 2.0.8-beta
- Added: August, 2016
- Updated: July, 2019
Usage
See which versions of kraken are available:
$ module avail kraken
Load one version into your environment and run it:
$ module load kraken/2.0.8-beta $ kraken2 --help
Installation
Notes from the sysadmin during installation:
$ git clone https://github.com/DerrickWood/kraken2.git $ cd kraken2 $ git checkout v2.0.8-beta $ sudo mkdir -p /export/apps/kraken/2.0.8-beta $ sudo chown aorth /export/apps/kraken/2.0.8-beta $ ./install_kraken2.sh /export/apps/kraken/2.0.8-beta $ sudo chown root /export/apps/kraken/2.0.8-beta/*
kraken-software.1563203444.txt.gz · Last modified: 2019/07/15 15:10 by aorth