Kaptive reports information about surface polysaccharide loci for Klebsiella pneumoniae species complex and Acinetobacter baumannii genome assemblies.

• Version: 3.1.0
• Added: July, 2025
• Link: https://github.com/klebgenomics/Kaptive

See which versions are available:

$ module avail kaptive

Load one version into your environment and run it:

$ module load kaptive/3.1.0
$ kaptivate -h

Notes from the sysadmin during installation:

$ module load python/3.10
$ sudo mkdir -p /export/apps/kaptive/3.1.0
$ sudo chown -R aorth:aorth /export/apps/kaptive/3.1.0
$ python -m venv /export/apps/kaptive/3.1.0
$ source /export/apps/kaptive/3.1.0/bin/activate
$ python -m pip install -U pip setuptools wheel
$ python -m pip install kaptive
$ python -m pip install -U dna_features_viewer
# Optional extra deps for dna-features-viewer
$ python -m pip install -U bokeh pandas bcbio-gff
$ sudo chown -R root:root /export/apps/kaptive/3.1.0